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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 178 62

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 21 17

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 54 20

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 108 35

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 30 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 12 7

Repositories

Showing 10 of 215 repositories
  • ModelArrayIO Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ModelArrayIO’s past year of commit activity
    Python 0 BSD-3-Clause 0 8 3 Updated Mar 24, 2026
  • sypres-docs Public
    PennLINC/sypres-docs’s past year of commit activity
    HTML 0 MIT 0 3 6 Updated Mar 24, 2026
  • xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    PennLINC/xcp_d’s past year of commit activity
    Python 108 BSD-3-Clause 35 41 8 Updated Mar 24, 2026
  • ConFixel Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ConFixel’s past year of commit activity
    Python 1 BSD-3-Clause 2 0 0 Updated Mar 24, 2026
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep’s past year of commit activity
    Python 54 20 44 6 Updated Mar 24, 2026
  • ModelArray Public

    ModelArray: an R package for statistical analysis of fixel-wise data and beyond

    PennLINC/ModelArray’s past year of commit activity
    R 6 4 19 5 Updated Mar 24, 2026
  • babs Public

    BIDS App Bootstrap (BABS)

    PennLINC/babs’s past year of commit activity
    Python 12 MIT 7 41 4 Updated Mar 23, 2026
  • transdiagnostic_executive_function Public

    Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping

    PennLINC/transdiagnostic_executive_function’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 23, 2026
  • bdt Public

    BIDS Derivatives Transformer

    PennLINC/bdt’s past year of commit activity
    Python 0 Apache-2.0 0 2 0 Updated Mar 23, 2026
  • mrtrix3 Public Forked from MRtrix3/mrtrix3

    MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

    PennLINC/mrtrix3’s past year of commit activity
    C++ 0 MPL-2.0 197 0 0 Updated Mar 20, 2026
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